Hi Juangar - you are right keeping things clean when tapping is not always easy. Some people solve it with hair elastics around the guitar neck (this is almost indispensable when doing 8 finger/two handed tapping).
The tapping in the lesson you are referring too (thanks for the kind words by the way!

) can be done by using standard muting techniques - rather than explaining it in words - I will point you towards a video tutorial with Ivan which covers this topic:
http://www.guitarmasterclass.net/misc-less...g-101-tutorial/Good luck!